Tools Reference
All MCP tools with examples
Overview
Storage Tools
Store information to memory
remember · learn · believe · hypothesize · commit
Retrieval Tools
Get information from memory
recall · trace · patterns
Organization Tools
Manage your knowledge
link · forget · revise · reflect
Reasoning Tools
Document your thinking
reason
Engagement Tools
Respond to system markers
dismiss · tick
Quick Decision Guide
| I want to... | Use this tool |
|---|---|
| Store a preference | remember |
| Store a fact with evidence | learn |
| Form a conclusion | believe |
| Search my memory | recall |
| Understand why I believe X | trace |
| Connect two concepts | link |
| Remove something | forget |
| Form a tentative belief | hypothesize |
| Update a hypothesis | revise |
| Finalize a hypothesis | commit |
| Store reasoning steps | reason |
| Dismiss a system marker | dismiss |
| Acknowledge a marker without action | tick |
Tool Reference
remember
Store an observation without evidence.
Scenario: User mentions a preference.
User: "I always use pnpm, not npm" Agent: [calls remember]
{
"content": "User prefers pnpm over npm",
"context": "stated during project setup"
}Parameters:
content(required): What to remembercontext(optional): When/where this was observedsupersedes(optional): node_id of knowledge being updated
Returns: { "node_id": "mem_abc123" }
learn
Store a claim with evidence.
Scenario: Agent learns a project fact from documentation.
User: "Check the README for the build process" Agent: [reads README, calls learn]
{
"claim": "Project uses esbuild for bundling",
"evidence": [
{"type": "documentation", "content": "README.md states 'npm run build uses esbuild'", "uri": "file://README.md"}
],
"confidence": 0.95
}Parameters:
claim(required): The fact being assertedevidence(required): Array of evidence objectsconfidence(optional): 0.0-1.0, defaults to 0.8supersedes(optional): node_id being updated
Returns: { "node_id": "know_abc123" }
believe
Form a conclusion from existing knowledge.
Scenario: Agent synthesizes a belief from multiple facts.
{
"conclusion": "User values developer experience over raw performance",
"about": ["mem_abc123", "know_def456"],
"reasoning": "Prefers TypeScript (type safety) and pnpm (speed) over alternatives"
}Parameters:
conclusion(required): The belief being formedabout(required): Array of node_ids this belief is based onreasoning(required): Why this conclusion followssupersedes(optional): node_id being updated
Returns: { "node_id": "bel_abc123" }
recall
Search and retrieve knowledge.
Scenario: Agent needs to know user preferences.
{
"query": "user preferences for package managers"
}Parameters:
query(optional): Natural language searchnode_id(optional): Retrieve specific nodeinclude_evidence(optional): Include evidence chains
Returns: Array of matching nodes with content and metadata.
trace
Show evidence chain for a belief.
Scenario: User asks why agent thinks something.
User: "Why do you think I prefer functional programming?"
{
"query": "preference for functional programming"
}Returns: Evidence chain showing:
- Source observations/claims
- Intermediate inferences
- Confidence at each step
link
Connect two nodes with a typed relationship.
Scenario: Connect related preferences.
{
"from": "mem_abc123",
"to": "mem_def456",
"relationship": "supports"
}Parameters:
from(required): Source node_idto(required): Target node_idrelationship(required): Type of connection (supports, contradicts, related_to, etc.)
Returns: { "link_id": "link_abc123" }
forget
Remove a node from memory.
Scenario: User requests data deletion.
{
"node_id": "mem_abc123"
}Parameters:
node_id(required): Node to remove
Returns: { "deleted": true }
Note: Linked nodes are not deleted, but links to the deleted node are removed.
hypothesize
Create a tentative belief while working through a problem.
Session-scoped: Hypotheses only exist within the MCP session that created them. You must call commit within the same session to persist them. For cross-session conclusions, use believe directly.
Scenario: Agent is debugging and forms a hypothesis.
{
"hypothesis": "The bug is caused by a race condition in the auth flow",
"based_on": ["mem_abc123"],
"confidence": 0.6
}Parameters:
hypothesis(required): Tentative beliefbased_on(optional): Supporting node_idsconfidence(optional): How confident (0.0-1.0)
Returns: { "hypothesis_id": "hyp_abc123", "session_id": "..." }
Hypotheses are working state. Use commit within the same session to crystallize into durable belief.
revise
Update a hypothesis with new information. Only works within the session that created the hypothesis.
Scenario: Agent finds more evidence.
{
"hypothesis_id": "hyp_abc123",
"new_content": "The race condition is specifically in the token refresh",
"new_confidence": 0.8
}Parameters:
hypothesis_id(required): Hypothesis to updatenew_content(optional): Updated hypothesis textnew_confidence(optional): Updated confidence
Returns: Updated hypothesis.
commit
Crystallize a hypothesis into a durable belief.
Must be called in the same session as hypothesize. Hypotheses do not survive session boundaries. If you need to store a conclusion across sessions, use believe directly.
Scenario: Agent confirms hypothesis was correct.
{
"hypothesis_id": "hyp_abc123"
}Parameters:
hypothesis_id(required): Hypothesis to commit
Returns: { "node_id": "bel_abc123" } (now a belief)
reason
Store a multi-step reasoning chain.
Scenario: Agent documents its reasoning process.
{
"steps": [
{"step": 1, "content": "User wants faster builds"},
{"step": 2, "content": "Current bundler is webpack"},
{"step": 3, "content": "esbuild is 10-100x faster than webpack"},
{"step": 4, "content": "Recommend migrating to esbuild"}
],
"conclusion": "Recommend esbuild migration"
}Parameters:
steps(required): Array of reasoning stepsconclusion(required): Final conclusion
Returns: { "node_id": "rsn_abc123" }
reflect
Store a meta-observation about own beliefs.
Scenario: Agent notices a contradiction in its knowledge.
{
"observation": "My beliefs about user's testing preferences are inconsistent",
"about": ["bel_abc123", "bel_def456"],
"action": "Should ask user to clarify"
}Parameters:
observation(required): Meta-observationabout(optional): Relevant node_idsaction(optional): Suggested action
Returns: { "node_id": "ref_abc123" }
patterns
Get workflow templates for common tasks.
Scenario: Agent wants to know how to handle a situation.
{
"action": "get",
"name": "onboarding"
}Returns: Workflow guide for the requested pattern.
dismiss
Dismiss a Contradiction or StaleCommitment marker after resolving it.
Scenario: Agent has addressed a contradiction flagged by the system and wants to clear it.
{
"marker_id": "mrk_abc123",
"reason": "Resolved by updating the stale belief with current evidence"
}Parameters:
marker_id(required): ID of the marker to dismissreason(required): Why the marker is being dismissed
Returns: { "dismissed": true }
tick
Acknowledge a system marker without taking any action. Use this when you have seen a marker but deliberately choose not to act on it right now.
Scenario: Agent notices an engagement marker but the current task is unrelated.
{
"about_hint": "stale belief on user testing preferences"
}Parameters:
about_hint(optional): Brief note on what was acknowledged
Returns: { "acknowledged": true }